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Francis Doyle III

Dean
Professor
John A. Paulson School of Engineering and Applied Sciences
Harvard
Office:
School of Engineering and Applied Sciences, Harvard
Website:
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Systems biology, dynamics & control, and network science. Neuronal architecture responsible for the regulation of circadian rhythms, neuronscience and modeling motor control, biologically inspired wireless communications algorithms, and human performance under stress.

Dean
Displaying 1 - 20 of 33

ICB Supported Publications

Functional network inference of the suprachiasmatic nucleus

Abel, J. H., Meeker, K., St. John, P. C., Granados-Fuentes, D., Wang, T., Bales, B. B., Doyle, F. J., Herzog, E. D. and Petzold, L. R.
PNAS,
10.1073/pnas.1521178113

Synchronization of pulse-coupled oscillators on (strongly) connected graphs

F. Núñez, Y. Wang, and F. J. Doyle III
IEEE Transactions on Automatic Control,
10.1109/TAC.2014.2361196

Collective oscillation period of inter-coupled biological negative cyclic feedback oscillators

Y. Wang, Y. Hori, S. Hara, and F. J. Doyle III
Proceedings of the 2015 IEEE Transactions on Automatic Control Conference,
10.1109/TAC.2014.2342072

Global synchronization of pulse-coupled oscillators interacting on cycle graphs

F. Núñez, Y. Wang, and F. J. Doyle III
Automatica,
10.1016/j.automatica.2014.10.111

Amplitude metrics for cellular circadian bioluminescence reporters

P. C. St. John, S. R. Taylor, J. H. Abel, and F. J. Doyle III
Biophysical Journal,
10.1016/j.bpj.2014.10.026

Spatiotemporal separation of PER and CRY posttranslational regulation in the mammalian circadian clock

P. C. St John, T. Hirota, S. a Kay, and F. J. Doyle
Proc. Natl. Acad. Sci. U. S. A.,
10.1073/pnas.1323618111

Intercellular Delay Regulates the Collective Period of Repressively Coupled Gene Regulatory Oscillator Networks

Y. Wang, Y. Hori, S. Hara, and F. J. Doyle
IEEE Trans. Automat. Contr,
10.1109/TAC.2013.2270072

A neuropeptide speeds circadian entrainment by reducing intercellular synchrony

S. An, R. Harang, K. Meeker, D. Granados-Fuentes, C. A Tsai, C. Mazuski, J. Kim, F. J. Doyle, L. R. Petzold, and E. D. Herzog
Proc. Natl. Acad. Sci. U. S. A.,
10.1073/pnas.1307088110

Modeling the intra- and extracellular cytokine signaling pathway under heat stroke in the liver

M. Rodriguez-Fernandez, B. Grosman, T. M. Yuraszeck, B. G. Helwig, L. R. Leon, F. J. Doyle III
PLOS One,
10.1371/journal.pone.0073393

Statistical analysis of the pulse-coupled synchronization strategy for wireless sensor networks

Y. Wang, F. Núñez, and F. J. Doyle
IEEE Trans. Signal Process.,
10.1109/TSP.2013.2275511

The influence of global cues and local coupling on the rate of synchronization in the presence of time delays

Y. Wang and F. J. Doyle
Automatica,
10.1016/j.automatica.2013.02.051

Exponential synchronization rate of Kuramoto oscillators in the presence of a pacemaker

Y. Wang and F. J. Doyle III
IEEE Transactions on Automatic Control,
10.1109/TAC.2012.2215772

Estimating confidence intervals in predicted responses for oscillatory biological models

P. C. St John and F. J. Doyle
BMC Syst. Biol.,
10.1186/1752-0509-7-71

The collective oscillation period of inter-coupled Goodwin oscillators

Y. Wang, Y. Hori, S. Hara, and F. J. Doyle III
51st IEEE Conference on Decision and Control,
10.1109/CDC.2012.6426590

Energy-efficient pulse-coupled synchronization strategy design for wireless sensor networks through reduced idle listening

Y. Wang, F. Nunez, and F. J. Doyle III
IEEE Transactions on Signal Processing,
10.1109/TSP.2012.2205685

Optimal phase response functions for fast pulse-coupled synchronization in wireless sensor networks

Y. Wang and F. J. Doyle III
IEEE Transactions on Signal Processing,
10.1109/TSP.2012.2208109

Bio-inspired synchronization of wireless sensor networks for acoustic event detection systems

F. Nunez, Y. Wang, S. Desai, G. Cakiades, and F. J. Doyle III
International IEEE Symposium on Precision Clock Synchronization for Measurement, Control and Communication,
10.1109/ISPCS.2012.6336613

Identification of small molecule activators of cryptochrome

T. Hirota, J. W. Lee, P. C. St. John, M. Sawa, K. Iwaisako, T. Noguchi, P. Y. Pongsawakul, T. Sonntag, D. K. Welsh, D. A. Brenner, F. J. Doyle III, P. G. Schultz, and S. A. Kay
Science,
10.1126/science.1223710

Bio-inspired hybrid control of pulse-coupled oscillators and application to synchronization of a wireless network

F. Nunez, Y. Wang, and F. J. Doyle III
Proceedings of the 2012 American Control Conference,

Modeling cortisol dynamics in the neuro endocrine axis distinguishes normal, depression, and post-traumatic stress disorder (PTSD) in humans

K. Sriram, M. Rodriguez-Fernandez, and F. Doyle
PLoS Computational Biology,
10.1371/journal.pcbi.1002379
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